PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.XK9AB
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 277aa    MW: 31265.8 Da    PI: 5.1922
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.XK9ABgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.71.9e-5261371128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lppGfrFhPtdeel+ +yLk+kveg ++el evi+ +d++k++Pw+Lp k  +++++ ew+fF++rd+ky++g+r+nratk+gyWkatgkdk+v+++ 
  Araip.XK9AB   6 LPPGFRFHPTDEELLGYYLKRKVEGLEIEL-EVIPVIDLCKFDPWELPeKsLLANRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDKKVVCQf 102
                  79****************************.99**************95345556778**************************************98 PP

          NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++g +ktLvfy+grap g +tdW+mheyrl
  Araip.XK9AB 103 dtPSTVTGYRKTLVFYRGRAPLGDRTDWLMHEYRL 137
                  877788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-604160IPR003441NAC domain
PROSITE profilePS5100557.376160IPR003441NAC domain
PfamPF023655.7E-297137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELL GYYLKRKVEG LEIELEVIPV IDLCKFDPWE LPEKSLLANR  60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDKKVVC QFDTPSTVTG YRKTLVFYRG  120
RAPLGDRTDW LMHEYRLADD LGLSSTCFQG GYALCRVIKK NEKVNNENDA SMRFSNEPFA  180
ISADASSSQP SYLNNESVYS SPNASPHNVD SNQASINTSS SSEFWVSPDL ILDSSKDYPQ  240
LQNTFTRCDI PSSTMTPWLS LDQPEISSSS SYSNFNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-51516116166NO APICAL MERISTEM PROTEIN
1ut4_B1e-51516116166NO APICAL MERISTEM PROTEIN
1ut7_A1e-51516116166NO APICAL MERISTEM PROTEIN
1ut7_B1e-51516116166NO APICAL MERISTEM PROTEIN
3swm_A1e-51516119169NAC domain-containing protein 19
3swm_B1e-51516119169NAC domain-containing protein 19
3swm_C1e-51516119169NAC domain-containing protein 19
3swm_D1e-51516119169NAC domain-containing protein 19
3swp_A1e-51516119169NAC domain-containing protein 19
3swp_B1e-51516119169NAC domain-containing protein 19
3swp_C1e-51516119169NAC domain-containing protein 19
3swp_D1e-51516119169NAC domain-containing protein 19
4dul_A1e-51516116166NAC domain-containing protein 19
4dul_B1e-51516116166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.XK9AB
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020975638.10.0NAC domain-containing protein 45-like
RefseqXP_025627493.10.0NAC domain-containing protein 71-like
SwissprotO496971e-100NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A445ARP10.0A0A445ARP1_ARAHY; Uncharacterized protein
STRINGGLYMA17G16500.21e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-94NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]