PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.X2KK1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 352aa    MW: 39942.6 Da    PI: 5.0644
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.X2KK1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35.3e-5261401128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lppGfrFhPtdeel+ +yLk+kve+ ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkdk+v+++ 
  Araip.X2KK1   6 LPPGFRFHPTDEELIGYYLKRKVEELEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDKKVVCQs 102
                  79****************************.99**************95334445667**************************************86 PP

          NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++g +ktLvfy+grap g +tdWvmheyrl
  Araip.X2KK1 103 spstsIMKATGYRKTLVFYRGRAPLGDRTDWVMHEYRL 140
                  554443344***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-594163IPR003441NAC domain
PROSITE profilePS5100557.0286163IPR003441NAC domain
PfamPF023652.1E-297140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELI GYYLKRKVEE LEIELEVIPV IDLYKFDPWE LPEKSFLPKR  60
DLEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDKKVVC QSSPSTSIMK ATGYRKTLVF  120
YRGRAPLGDR TDWVMHEYRL CDDLGQDSPS FQGAYALCRV IKKNDKASDY KGKRGVSSSK  180
NENETSMRLS SSKEHLSISA DVSSQASQLC SESRYSSPIA SPCAYNVAAT AVFEPPSVDT  240
NPSTFLVSPD MILDSSKDFA QTQDAISEFL PHHELLSTMT PWQSLEHTEI SSSSSYSNFN  300
GEIEFSDELG LIGRMSRYSG QVDMLDFYGN EEVLYEYEGY DQINSIRDPR QF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-50516716169NO APICAL MERISTEM PROTEIN
1ut4_B1e-50516716169NO APICAL MERISTEM PROTEIN
1ut7_A1e-50516716169NO APICAL MERISTEM PROTEIN
1ut7_B1e-50516716169NO APICAL MERISTEM PROTEIN
4dul_A1e-50516716169NAC domain-containing protein 19
4dul_B1e-50516716169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.X2KK1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201544.10.0NAC domain-containing protein 72
SwissprotO496971e-103NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A371FFT90.0A0A371FFT9_MUCPR; NAC domain-containing protein 71 (Fragment)
STRINGGLYMA05G23840.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.12e-92NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]