PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.WRZ2J
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 594aa    MW: 65819.8 Da    PI: 6.507
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.WRZ2JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS189.81.8e-581724672275
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl...fsevsPilkf 93 
                  ++lL+ cA a+++++l+++q+lL  l+elasp+gd+++Rlaa+ + AL ++l++s s+ +++ + +++s ++   s+++ +++k+   f+evsP++ f
  Araip.WRZ2J 172 EQLLIPCALAINAKNLNRVQHLLYVLHELASPTGDANHRLAAHGLSALTHHLSSSYSSSSSSSTITNDSGTKtfaSVDSRFFHKTllkFYEVSPWFSF 269
                  689***************************************************7777766665555554445665555555555689********** PP

         GRAS  94 shltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..........skeeleetgerLakfAeelgvp 175
                   + +aN  Il+ +++e     +++Hi+D+++s+G+QWp++l+aL+ Rp ++pp +R+T+v +++++                +  + L  +A++++++
  Araip.WRZ2J 270 PNNIANASILQFLSEEessssRTLHILDIGVSHGVQWPTFLEALTRRPgGPPPLVRLTVVTASSNEneqnmetpfsVGPPGDNFSSYLLGYAQTIKLN 367
                  ***********9999878887889************************55566*******99888866666655544455567888999********* PP

         GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfds 270
                  +++n +   +l++l+ ++++++++E+ +V+ +++lh+l    +  ++er+e+Lk+++s++Pk v++++++  +++ + ++F+++f++ +ey ++++ds
  Araip.WRZ2J 368 LQINRIDNLELQTLNSKSIDTSSDETFIVCAQFRLHHLN---HRNPDERSEFLKALRSMEPKGVILSDNNieCSCnGCGNFAAGFSRRVEYLWSFLDS 462
                  *****8777*****************************8...55555667******************98335554457******************* PP

         GRAS 271 leakl 275
                  +++ +
  Araip.WRZ2J 463 TSVAF 467
                  98765 PP

2GRAS35.31.6e-11518576317374
         GRAS 317 erleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  er++eaGF    l+e++ + a++llrk++ +++++vee+++++ l Wk++++ ++S+W+
  Araip.WRZ2J 518 ERMKEAGFVGGMLGEDTIDGARALLRKYDsNWEMKVEEDNKCVGLFWKGQAVSFCSMWK 576
                  79***************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.792145555IPR005202Transcription factor GRAS
PfamPF035146.4E-56172467IPR005202Transcription factor GRAS
PfamPF035145.5E-9518576IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MNMEPNPTQD ALDWQLEGSA SFFPPFLDYP YPIQDYQFWD QNQDIICYHN QIDAGTGSPN  60
AANGTAAVVA TTATSTTCTT PSDPEPYSYN NLPVSDLPTK KRNSSDNDCS VQKPSQSHRA  120
KKFKARSTNE VDNGDSVAEG TSVRKSGGNK KGGGKNNGNN CNNGNKEGRW AEQLLIPCAL  180
AINAKNLNRV QHLLYVLHEL ASPTGDANHR LAAHGLSALT HHLSSSYSSS SSSSTITNDS  240
GTKTFASVDS RFFHKTLLKF YEVSPWFSFP NNIANASILQ FLSEEESSSS RTLHILDIGV  300
SHGVQWPTFL EALTRRPGGP PPLVRLTVVT ASSNENEQNM ETPFSVGPPG DNFSSYLLGY  360
AQTIKLNLQI NRIDNLELQT LNSKSIDTSS DETFIVCAQF RLHHLNHRNP DERSEFLKAL  420
RSMEPKGVIL SDNNIECSCN GCGNFAAGFS RRVEYLWSFL DSTSVAFKGR XXXXXXXXXX  480
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXCERM KEAGFVGGML GEDTIDGARA  540
LLRKYDSNWE MKVEEDNKCV GLFWKGQAVS FCSMWKLDGG EKQGRSSSTL NSRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-1220146733273GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016172712.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLG7L7I40.0G7L7I4_MEDTR; GRAS family transcription factor
STRINGGLYMA16G01020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-117GRAS family protein