PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.WRZ2J
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 594aa    MW: 65819.8 Da    PI: 6.507
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.WRZ2JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS189.81.8e-581724672275
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl...fsevsPilkf 93 
                  ++lL+ cA a+++++l+++q+lL  l+elasp+gd+++Rlaa+ + AL ++l++s s+ +++ + +++s ++   s+++ +++k+   f+evsP++ f
  Araip.WRZ2J 172 EQLLIPCALAINAKNLNRVQHLLYVLHELASPTGDANHRLAAHGLSALTHHLSSSYSSSSSSSTITNDSGTKtfaSVDSRFFHKTllkFYEVSPWFSF 269
                  689***************************************************7777766665555554445665555555555689********** PP

         GRAS  94 shltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..........skeeleetgerLakfAeelgvp 175
                   + +aN  Il+ +++e     +++Hi+D+++s+G+QWp++l+aL+ Rp ++pp +R+T+v +++++                +  + L  +A++++++
  Araip.WRZ2J 270 PNNIANASILQFLSEEessssRTLHILDIGVSHGVQWPTFLEALTRRPgGPPPLVRLTVVTASSNEneqnmetpfsVGPPGDNFSSYLLGYAQTIKLN 367
                  ***********9999878887889************************55566*******99888866666655544455567888999********* PP

         GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfds 270
                  +++n +   +l++l+ ++++++++E+ +V+ +++lh+l    +  ++er+e+Lk+++s++Pk v++++++  +++ + ++F+++f++ +ey ++++ds
  Araip.WRZ2J 368 LQINRIDNLELQTLNSKSIDTSSDETFIVCAQFRLHHLN---HRNPDERSEFLKALRSMEPKGVILSDNNieCSCnGCGNFAAGFSRRVEYLWSFLDS 462
                  *****8777*****************************8...55555667******************98335554457******************* PP

         GRAS 271 leakl 275
                  +++ +
  Araip.WRZ2J 463 TSVAF 467
                  98765 PP

2GRAS35.31.6e-11518576317374
         GRAS 317 erleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  er++eaGF    l+e++ + a++llrk++ +++++vee+++++ l Wk++++ ++S+W+
  Araip.WRZ2J 518 ERMKEAGFVGGMLGEDTIDGARALLRKYDsNWEMKVEEDNKCVGLFWKGQAVSFCSMWK 576
                  79***************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.792145555IPR005202Transcription factor GRAS
PfamPF035146.4E-56172467IPR005202Transcription factor GRAS
PfamPF035145.5E-9518576IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MNMEPNPTQD ALDWQLEGSA SFFPPFLDYP YPIQDYQFWD QNQDIICYHN QIDAGTGSPN  60
AANGTAAVVA TTATSTTCTT PSDPEPYSYN NLPVSDLPTK KRNSSDNDCS VQKPSQSHRA  120
KKFKARSTNE VDNGDSVAEG TSVRKSGGNK KGGGKNNGNN CNNGNKEGRW AEQLLIPCAL  180
AINAKNLNRV QHLLYVLHEL ASPTGDANHR LAAHGLSALT HHLSSSYSSS SSSSTITNDS  240
GTKTFASVDS RFFHKTLLKF YEVSPWFSFP NNIANASILQ FLSEEESSSS RTLHILDIGV  300
SHGVQWPTFL EALTRRPGGP PPLVRLTVVT ASSNENEQNM ETPFSVGPPG DNFSSYLLGY  360
AQTIKLNLQI NRIDNLELQT LNSKSIDTSS DETFIVCAQF RLHHLNHRNP DERSEFLKAL  420
RSMEPKGVIL SDNNIECSCN GCGNFAAGFS RRVEYLWSFL DSTSVAFKGR XXXXXXXXXX  480
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXCERM KEAGFVGGML GEDTIDGARA  540
LLRKYDSNWE MKVEEDNKCV GLFWKGQAVS FCSMWKLDGG EKQGRSSSTL NSRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-2416845184353Protein SHORT-ROOT
5b3h_B1e-2416845130299Protein SHORT-ROOT
5b3h_E1e-2416845130299Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.WRZ2J
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020967273.10.0nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A444XGM20.0A0A444XGM2_ARAHY; Uncharacterized protein
STRINGAET017700.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-117GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]