PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VZF8R
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 236aa    MW: 25721.4 Da    PI: 8.3335
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VZF8RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.72.7e-312103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++ C+l+p++     p++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e
  Araip.VZF8R   2 SCNGCRVLRKGCSETCMLRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVE 99 
                  6***********************************************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  Araip.VZF8R 100 TVLR 103
                  8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7781107IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-272101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCMLR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISNVPEAQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPS PEFMGMESAG  120
PVVATDEASE AEVTCGDIWK KVRDPNPSCR FTSSRSTRVA AGAAGKRKRL EEVTRVQTAA  180
DLDLRLTPIF LQKIADYRRR PGSPSMTSEE SVTTTAEIGG DQWGHSGERK VLNLFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016185912.11e-175PREDICTED: LOB domain-containing protein 38
SwissprotQ9SZE82e-88LBD39_ARATH; LOB domain-containing protein 39
TrEMBLQ0PN091e-124Q0PN09_9FABA; Lateral organ boundaries domain protein
STRINGGLYMA01G40010.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.16e-87LOB domain-containing protein 39