PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VT4Q1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GeBP
Protein Properties Length: 312aa    MW: 34788 Da    PI: 10.013
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VT4Q1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57385.56.9e-2774170297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkks..isfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  lfqr++seeDei +L+Gl +f aktgk+p++  d+fy+f+k+s  i ++vs +ql +KirrLKkKf+++ +k k+gk  +  k+h+ ++++l k +Wg
  Araip.VT4Q1  74 LFQRVFSEEDEIGILKGLSEFIAKTGKEPYKCADEFYDFMKGSnlIRANVSCNQLKDKIRRLKKKFENNLEKEKNGKG-TTLKPHELEALQLGKNVWG 170
                  79**************************************975559**************************888887.6779**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.1E-2575170IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MVSKPSSSSS KPSPKLKSQP SASVSQTKSG SKRAAENSID HSNQPKRGKK AQEDHAVGSV  60
EEDPQKSRDE FKSLFQRVFS EEDEIGILKG LSEFIAKTGK EPYKCADEFY DFMKGSNLIR  120
ANVSCNQLKD KIRRLKKKFE NNLEKEKNGK GTTLKPHELE ALQLGKNVWG HDGRGGEAVR  180
NETAKKDTVN NEKAAKSTPK KALVPHSNGK AEAKSKLNSE PLDTNEGRRM SEFSVTSLAL  240
TSMLRYDGTF GKPFGEDYIR KGIELLGVSK REDIEARWRK FKDAENKLYA EIAEFYAEQA  300
KLIYQANSSS SS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.VT4Q1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016176119.10.0probable transcription factor At1g11510 isoform X1
RefseqXP_025676135.10.0probable transcription factor At1g11510
TrEMBLA0A445C6H30.0A0A445C6H3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.14e-15DNA-binding storekeeper protein-related transcriptional regulator