PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.V9N10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 202aa    MW: 22253.2 Da    PI: 7.7672
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.V9N10genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.6e-39191181100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pe++red+++sl+yeAear+rdPvyG++g i  lq+++ +l+++la +k
  Araip.V9N10  19 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEDQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMLELQHDLAIAK 116
                  6*********************************************************************************************9998 PP

       DUF260  99 ee 100
                  ++
  Araip.V9N10 117 DR 118
                  75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.30318119IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3819116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MKKSGGGIMK GYEPRSSSSC AACKFLKRRC IPNCIFAPYF RSDECKKFAK VHKVFGASNV  60
SKILVEVPED QREDTVNSLA YEAEARLRDP VYGCIGAIAL LQRKMLELQH DLAIAKDRLA  120
RYSAVAATAD ATSLITSSSS SSDNIFHFNN SQVSLPPFPE FPSSSDFNDT AAFCHASSSS  180
SQSFPRHDTT VVDDFIQIPY IF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016165534.11e-148PREDICTED: LOB domain-containing protein 21-like
SwissprotQ9SRL89e-65LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A0L9UVJ52e-97A0A0L9UVJ5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RKG03e-97A0A0S3RKG0_PHAAN; Uncharacterized protein
STRINGGLYMA14G06270.17e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.14e-65LOB domain-containing protein 21