PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.U8UTV
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HB-other
Protein Properties Length: 257aa    MW: 29616.2 Da    PI: 5.2884
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.U8UTVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.18.3e-05460751
                 --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHH CS
     Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNr 51
                 f+ ++++eLe+ +++  ++ ++++  +  A +           +Lt +qV+ WFqN+
  Araip.U8UTV  4 FSIDEVNELERIYKEmgEKSVDQNFCKSVAISFssssrragkaSLTWEQVRHWFQNK 60
                 7778889999999966688888888888888888888999998*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF167192.6E-36107234IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006306Biological ProcessDNA methylation
GO:0006346Biological Processmethylation-dependent chromatin silencing
GO:0031047Biological Processgene silencing by RNA
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDRFSIDEVN ELERIYKEMG EKSVDQNFCK SVAISFSSSS RRAGKASLTW EQVRHWFQNK  60
LKESETNVAS TTSSMNLYID LSEASVLRNG QKSSSNAKGK RAEDISELTF EARSSKDVAW  120
HDVASFLNYR VLSTGELEVR IRYAGFGKEQ DEWINVKEGV RERSIPLEPS ECHKVNDGDL  180
ILCFLEKDDY ALYVDARVVR VLRRLHGPTD CRCIFIVRYV HDKTEEGVSW NRLCCRPTQE  240
EHVPEEIPLN PLEDLWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iup_A2e-521062392135SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B2e-521062392135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_A2e-521062392135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-521062392135SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-521062392135SHH1 SAWADEE
4iur_B2e-521062392135SHH1 SAWADEE
4iut_A2e-521062392135SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-521062392135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-521062392135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-521062392135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-521062392135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-521062392135SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016176806.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1
SwissprotQ9XI471e-79SHH1_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 1
TrEMBLA0A151SH361e-109A0A151SH36_CAJCA; Uncharacterized protein
STRINGGLYMA07G01880.31e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27041415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.13e-38sequence-specific DNA binding transcription factors;sequence-specific DNA binding