PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.S69I6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 344aa    MW: 37395.7 Da    PI: 6.973
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.S69I6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081133155123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  Araip.S69I6 133 YECKTCNRTFPSFQALGGHRASH 155
                  99**********99999998887 PP

2zf-C2H2130.0003240262123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F++   L  H+r+H
  Araip.S69I6 240 HECSICGSEFTSGQALGGHMRRH 262
                  78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.57E-8132155No hitNo description
PfamPF139126.7E-13133157IPR007087Zinc finger, C2H2
SMARTSM003550.052133155IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305133160IPR007087Zinc finger, C2H2
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
SuperFamilySSF576671.57E-8235262No hitNo description
PfamPF139122.8E-11240264IPR007087Zinc finger, C2H2
SMARTSM003550.019240262IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014240267IPR007087Zinc finger, C2H2
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDYKEDYYLS NTSNDNCNVV HHDATHHIAK GKRTKRLRLL CGGATVIMPA SSCSSASGDD  60
HGSFSISSTT NQEEEDMANC LILLAQGGGD SHQKPPQVDD QDEDDDGCGN NKKKFSEIET  120
ATINNNKVGF YIYECKTCNR TFPSFQALGG HRASHKKPKL TTIPAAEDKK PPPPSPPPPL  180
PPPPPQQLMM KTNYDHHLHH SQQIETVPPN NNNPIISLQF GSGQKGNFHG NNNNKPNKIH  240
ECSICGSEFT SGQALGGHMR RHRATAAAAA NSTAQANVGL SRIEATSTVI TTTVEVQPRN  300
ILELDLNLPA PEEDLREPKF QFATAATKKS MVLSAAPALV DCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.S69I6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187513.10.0zinc finger protein ZAT5
RefseqXP_025641675.10.0zinc finger protein ZAT5
TrEMBLA0A445E5820.0A0A445E582_ARAHY; Uncharacterized protein
STRINGGLYMA11G19830.16e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-49C2H2 family protein