PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RJJ5V
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 173aa    MW: 18861.5 Da    PI: 8.483
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RJJ5VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260147.14.9e-46171161100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvh++FGasnv k+l++lp ++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+la ++
  Araip.RJJ5V  17 PCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHRVFGASNVNKMLQDLPMHQRRDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLAIAQ 114
                  7**********************************************************************************************998 PP

       DUF260  99 ee 100
                  +e
  Araip.RJJ5V 115 AE 116
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.76616117IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-4517114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MKEQGGGGGR KQGAASPCAA CKLLRRRCAQ DCVFAPYFPA DEPHKFANVH RVFGASNVNK  60
MLQDLPMHQR RDAVSSMVYE ANARVRDPVY GCVGAISSLQ QQIDVLQAQL AIAQAEVVHL  120
KMRQPNYISN GMGPNSPTNS GSPPSKVMDS QAKPIFGMDM VVDQTSYDDS MWS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016197703.11e-128PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE99e-73LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A151RMB81e-100A0A151RMB8_CAJCA; LOB domain-containing protein 4
STRINGGLYMA09G02510.13e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-72LOB domain-containing protein 4