PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.R0657
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 211aa    MW: 23678.6 Da    PI: 9.8253
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.R0657genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.86.6e-47151451128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  +ppGfrF+Ptdeelv +yLk kv + +l++ ++i+++++ +++PwdLp ++  e++e+yfFs+++ ky++g+r nr+t+sgyWkatg+dk+++s+   
  Araip.R0657  15 MPPGFRFQPTDEELVFQYLKCKVFSFPLPA-SMIPDINLSNYDPWDLPGNC-DEHQEMYFFSSKEPKYRNGSRMNRTTTSGYWKATGSDKRIISSsnn 110
                  79****************************.89***************655.45789************************************98666 PP

          NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++  g++ktLvfy+g++p+g++t+Wv+heyrl
  Araip.R0657 111 sdDNSILGIRKTLVFYQGKSPNGTRTHWVLHEYRL 145
                  655556***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-5312170IPR003441NAC domain
PROSITE profilePS5100552.00515170IPR003441NAC domain
PfamPF023652.8E-2416145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEKLNFVKKN GVSRMPPGFR FQPTDEELVF QYLKCKVFSF PLPASMIPDI NLSNYDPWDL  60
PGNCDEHQEM YFFSSKEPKY RNGSRMNRTT TSGYWKATGS DKRIISSSNN SDDNSILGIR  120
KTLVFYQGKS PNGTRTHWVL HEYRLVSTTL HANNNACDIG DWVLCRLSVK KRSVGSGSII  180
ISKKARSSPS SSSSSSTSSN NVMEVSSSYA S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-471517417169NO APICAL MERISTEM PROTEIN
1ut4_B7e-471517417169NO APICAL MERISTEM PROTEIN
1ut7_A7e-471517417169NO APICAL MERISTEM PROTEIN
1ut7_B7e-471517417169NO APICAL MERISTEM PROTEIN
3swm_A9e-471517420172NAC domain-containing protein 19
3swm_B9e-471517420172NAC domain-containing protein 19
3swm_C9e-471517420172NAC domain-containing protein 19
3swm_D9e-471517420172NAC domain-containing protein 19
3swp_A9e-471517420172NAC domain-containing protein 19
3swp_B9e-471517420172NAC domain-containing protein 19
3swp_C9e-471517420172NAC domain-containing protein 19
3swp_D9e-471517420172NAC domain-containing protein 19
4dul_A7e-471517417169NAC domain-containing protein 19
4dul_B7e-471517417169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.R0657
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193506.11e-156NAC domain-containing protein 41
RefseqXP_025637475.11e-156NAC domain-containing protein 41
SwissprotO227983e-64NAC41_ARATH; NAC domain-containing protein 41
TrEMBLA0A444ZYC41e-155A0A444ZYC4_ARAHY; Uncharacterized protein
STRINGGLYMA08G01280.14e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.23e-61NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]