PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N1V8H
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YC
Protein Properties Length: 280aa    MW: 31375.6 Da    PI: 6.2759
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N1V8HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.18.4e-561002031101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql+sfw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi
  Araip.N1V8H 100 QLQSFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 197
                  89******99999************************************************************************************* PP

        NF-YC  96 vprdel 101
                  vpr++l
  Araip.N1V8H 198 VPREDL 203
                  ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.53E-3392194IPR009072Histone-fold
PfamPF008081.8E-21122185IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.2E-37123200IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
KILNICSLEH LLLLQRMDPH QGHNQNPSMG VGGSGAQFPY GSNPYQPNQM TSSPGMVVPP  60
IGTIQSTGQP ATAQLGQHQL AYQHIHQQQQ QQQQMQLQQQ LQSFWANQYQ EIEKVTDFKN  120
HSLPLARIKK IMKADEDVRM ISAEAPVIFA RACEMFILEL TLRSWNHTEE NKRRTLQKND  180
IAAAITRTDI FDFLVDIVPR EDLKDEVLTS VPGGTMAVPG PADSIPYCYM PPQHAQVGAA  240
GVMMGNPAMD PNLYAQQPHP YIAPQMWPQP PEQQQSPSDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B1e-401152001297NF-YC
4awl_C1e-40115200994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B1e-40115200994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016174068.10.0PREDICTED: nuclear transcription factor Y subunit C-3
RefseqXP_016174067.10.0PREDICTED: nuclear transcription factor Y subunit C-3
RefseqXP_016174066.10.0PREDICTED: nuclear transcription factor Y subunit C-3
RefseqXP_015939875.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015939874.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015939873.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ9ZVL36e-88NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLG7KYQ41e-154G7KYQ4_MEDTR; Nuclear transcription factor Y protein
STRINGGLYMA19G42460.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.31e-82nuclear factor Y, subunit C3