PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.MQD5S
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 289aa    MW: 33148.2 Da    PI: 5.8422
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.MQD5SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.31.7e-4171331128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lp+G+rF+Pt+eel+ +yL++k  g++ e++++i++vd+++++PwdLp + kvk++++ew+fF +   ky ++kr nr+t+ gyWk tgk++ ++++ 
  Araip.MQD5S   7 LPVGYRFRPTEEELLIHYLNNKHLGNDAEIKNTISQVDLCNFDPWDLPeQsKVKSDDQEWFFFNEL--KYMKNKRCNRKTNMGYWKITGKERIIKRTg 102
                  799***************************999**************95258899999*****886..778899******************999986 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++++g+k+tLvfy  ++p+ +kt+Wv+hey++
  Araip.MQD5S 103 TDSVIGTKRTLVFY--KRPHNVKTNWVLHEYHA 133
                  6778**********..788889*********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-424152IPR003441NAC domain
PROSITE profilePS5100542.7687153IPR003441NAC domain
PfamPF023652.1E-238132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAETRVLPVG YRFRPTEEEL LIHYLNNKHL GNDAEIKNTI SQVDLCNFDP WDLPEQSKVK  60
SDDQEWFFFN ELKYMKNKRC NRKTNMGYWK ITGKERIIKR TGTDSVIGTK RTLVFYKRPH  120
NVKTNWVLHE YHALHQKVGS CQSNIVLSRV TMNAEKREKK LKTKASNIIE EEVKCEDEPC  180
SEITGCVTQA TTEDAILPDN ACVSSEWQQP QAMDYEILSS GQRSSVAYSG NENNAALLPM  240
EATWRQDAGM NTECFWNSLF SSIDADPHAE FLNSVLAGDD QLYVDSGHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-29715017162NO APICAL MERISTEM PROTEIN
1ut4_B3e-29715017162NO APICAL MERISTEM PROTEIN
1ut7_A3e-29715017162NO APICAL MERISTEM PROTEIN
1ut7_B3e-29715017162NO APICAL MERISTEM PROTEIN
3swm_A3e-29715020165NAC domain-containing protein 19
3swm_B3e-29715020165NAC domain-containing protein 19
3swm_C3e-29715020165NAC domain-containing protein 19
3swm_D3e-29715020165NAC domain-containing protein 19
3swp_A3e-29715020165NAC domain-containing protein 19
3swp_B3e-29715020165NAC domain-containing protein 19
3swp_C3e-29715020165NAC domain-containing protein 19
3swp_D3e-29715020165NAC domain-containing protein 19
4dul_A3e-29715017162NAC domain-containing protein 19
4dul_B3e-29715017162NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.MQD5S
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016185093.10.0NAC domain-containing protein 14-like
RefseqXP_025631883.10.0NAC domain-containing protein 14-like isoform X1
SwissprotB5X5704e-39NAC14_ARATH; NAC domain-containing protein 14
TrEMBLA0A445ACS40.0A0A445ACS4_ARAHY; Uncharacterized protein
STRINGAES846278e-50(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.12e-41NAC 014