PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.MGF6M
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 217aa    MW: 23735.4 Da    PI: 4.46
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.MGF6MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.22e-31790183
       DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83
                 +C aCk+lrrkC ++Cv+apyf  +q + +fa+vhk++Gasnv++ll++lp  +r+da+ +++yeA ar++dP+yG+v+ +++ 
  Araip.MGF6M  7 SCGACKFLRRKCGSGCVFAPYFSYDQaATHFAAVHKIYGASNVSRLLSHLPILNRSDAAITITYEALARMQDPIYGCVASLQEE 90
                 6***********************99789*************************************************988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.6376108IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-29789IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MTGFGSSCGA CKFLRRKCGS GCVFAPYFSY DQAATHFAAV HKIYGASNVS RLLSHLPILN  60
RSDAAITITY EALARMQDPI YGCVASLQEE IDIIGNLMAN STTGATNCGI NNVEAPITKM  120
EYSNCGIQYP MQDDDDAVTT TNQCYQNEMA NNILSQEGSM TPRQGYGSHM DIELPNNNGN  180
GFEGPFVFDD HPNFNNNNNP LEKFLSGIDQ EGFMNHP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016164125.11e-154PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS85e-46LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A0B2SA434e-84A0A0B2SA43_GLYSO; LOB domain-containing protein 33
TrEMBLK7KAM44e-84K7KAM4_SOYBN; Uncharacterized protein
STRINGGLYMA02G41710.21e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-47LOB domain-containing protein 33