PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.LE5CL
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 262aa    MW: 29514.2 Da    PI: 8.7879
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.LE5CLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.2e-184292256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                  ykGVr++  +g+WvAeIr+p+    r  r++lg+f t  eAa a++aa++kl+g+
  Araip.LE5CL 42 TYKGVRQRI-WGKWVAEIREPR----RgSRIWLGTFNTSHEAALAYDAAARKLYGH 92
                 69****998.**********83....46*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.20E-2141101No hitNo description
PfamPF008471.2E-134292IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2142100IPR016177DNA-binding domain
SMARTSM003804.5E-3542105IPR001471AP2/ERF domain
PROSITE profilePS5103222.0494299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2942100IPR001471AP2/ERF domain
PRINTSPR003672.3E-94354IPR001471AP2/ERF domain
PRINTSPR003672.3E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MIKAKMMGTD QEGKQLMRKQ AQTNSRKGCM RGKGGPQNAT CTYKGVRQRI WGKWVAEIRE  60
PRRGSRIWLG TFNTSHEAAL AYDAAARKLY GHDAKLNLPD LQPSISTTQD IQRDNLLQQQ  120
SHMMINQHNI GTSFNNNNNH LKPLVPMADE VGVTPIYTNE AIMSLPLRDD INNINNFNTK  180
PIILESFQNP TKPMDNNIIN NNNNVEKPSS SFSEPDFYDD SIWTEAAASL NFPMLSDANN  240
GFYEAGDMAW ICKFGFKSKH GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-184399360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.LE5CL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020961413.10.0ethylene-responsive transcription factor RAP2-12-like
RefseqXP_025662417.10.0ethylene-responsive transcription factor RAP2-12
TrEMBLA0A444YGE40.0A0A444YGE4_ARAHY; Uncharacterized protein
STRINGXP_007136043.13e-56(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-38ERF family protein