PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.J93FI
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 294aa    MW: 33464.6 Da    PI: 8.816
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.J93FIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.11.8e-32541941128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk 84 
                  lp+G++F+Ptd+e++ e+L++kv+++ ++l+        +++   +i+ ++P++Lp  v ++    +fF++ +k+y+tg+rk+r+++      + +W+
  Araip.J93FI  54 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICCTHPEKLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtdadgsETRWH 149
                  799***********9.99*****99984443333332222333336**********.555555677******************744446555788** PP

          NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  +tgk+++v+  +g+l+g kk+Lv+y   ++++k+ekt+Wvmh+y+l
  Araip.J93FI 150 KTGKTRPVYI-SGKLKGYKKILVLYtnYKKQRKPEKTNWVMHQYHL 194
                  **********.999***********5435888899*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-3749213IPR003441NAC domain
PROSITE profilePS5100532.39854213IPR003441NAC domain
PfamPF023651.5E-1555194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTQCNSNDYP ENNHNTIVER NKDILISRTC PSCGHHIKCQ QDHQGAGIHD LPGLPAGVKF  60
DPTDQEILEH LEAKVRSDIH KLHPLIDEFI PTLEGENGIC CTHPEKLPGV GKDGLIRHFF  120
HRPSKAYTTG TRKRRKVHTD ADGSETRWHK TGKTRPVYIS GKLKGYKKIL VLYTNYKKQR  180
KPEKTNWVMH QYHLGNNEEE KEGELVVSKV FYQTQPRQCA GSLLIKDSSS FPAKLKDQSG  240
VHHHEVTNNH KNNGFVEYYN ASFISFAQGE QQHRSNNPTL ISHFPAHDGA PFIP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.J93FI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016171970.10.0NAC domain-containing protein 73
RefseqXP_020964526.10.0NAC domain-containing protein 73
RefseqXP_020964527.10.0NAC domain-containing protein 73
RefseqXP_025671310.10.0NAC domain-containing protein 73
SwissprotO494591e-115NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A444Y6250.0A0A444Y625_ARAHY; Uncharacterized protein
STRINGXP_004487194.11e-166(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-105NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]