PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.IN0FT
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 353aa    MW: 39134 Da    PI: 5.7169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.IN0FTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.7e-1756104355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+++++g
  Araip.IN0FT  56 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSIKG 104
                  56******.**********965...5***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.41E-2955111No hitNo description
SMARTSM003808.0E-3255118IPR001471AP2/ERF domain
PROSITE profilePS5103220.24455112IPR001471AP2/ERF domain
PRINTSPR003672.4E-75667IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2656111IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1956112IPR016177DNA-binding domain
PfamPF008473.4E-1058104IPR001471AP2/ERF domain
PRINTSPR003672.4E-77894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSTSSGTSQT YLKGHEEHMN NSSSSTLIIL QRNTSSSCGT ERRGRRKQQS AEPGRFLGVR  60
RRPWGRYAAE IRDPTTKERH WLGTFDTAHE AALAYDRAAL SIKGGLARTN FIYTTTQNNT  120
INGNNLLNSM DNNPHHHHQQ VILPPSQDYF LNNTHQNCIM SHQLDDDITS LVHDENPSKL  180
VMKGDENLFF FSATDSTNSG YLECIVPENC FRPISSSTPT NNNNTSNSSM SAASAPSDQN  240
VVSSINTNTM EALKHYYGGE ELDGQGIFWN NQDEQQSSWD CNNKSNNYGE LSAIFDKQEG  300
CMMNALCPIM NETSPSYGVV VTTREAAIPI PSTTSPSIPS LGDVYLGMTY SLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1850111971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.IN0FT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016177622.10.0ethylene-responsive transcription factor ERF086-like
RefseqXP_025682916.10.0ethylene-responsive transcription factor ERF086-like
TrEMBLA0A444WWI90.0A0A444WWI9_ARAHY; Uncharacterized protein
STRINGXP_007154243.12e-69(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-44ERF family protein