PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.I60BC
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 234aa    MW: 26256 Da    PI: 6.5178
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.I60BCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.21.1e-21590281
          NAM  2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksg 81
                 p GfrF Pt+eelv +yL+ +++ +   +++++vi+ vdi+ vePw+Lp+     +++e+++w+fF++r++++a+g r nr+t+sg
  Araip.I60BC  5 PTGFRFYPTEEELVAFYLNTQLQLQGhaNNINRVIPVVDINGVEPWTLPSlageLCREEKEQWFFFVPRQEREARGGRINRTTASG 90
                 78******************98777644778889***************546654455777*********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-304132IPR003441NAC domain
PROSITE profilePS5100519.8314156IPR003441NAC domain
PfamPF023651.4E-115106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEDPPTGFRF YPTEEELVAF YLNTQLQLQG HANNINRVIP VVDINGVEPW TLPSLAGELC  60
REEKEQWFFF VPRQEREARG GRINRTTASG KAPTGRKTKW KMHEYRAIVQ APNQSPTAIP  120
QLRHEFSLCR VYVISGSFRA FDRRPREVVV PRVLHHGSST TSAQQHQGES SARVQANNNN  180
NGSSSSETSL SSGGPDLPPD TGGGGSSSNW NSSEVQVQAQ VQEPLWEWEQ LDWL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.I60BC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935858.11e-149NAC domain-containing protein 90
RefseqXP_025614236.11e-149NAC domain-containing protein 90
SwissprotQ9FMR36e-59NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A445BWI51e-148A0A445BWI5_ARAHY; Uncharacterized protein
STRINGGLYMA12G31150.12e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-53NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]