PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.I1LYJ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 224aa    MW: 24755.8 Da    PI: 7.0368
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.I1LYJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.71.1e-39141151101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkCa+dCv+apyf +eq +++fa++hk+FGasnv+k+l ++p +er +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++
  Araip.I1LYJ  14 PCGACKFLRRKCASDCVFAPYFSSEQgAARFAAIHKVFGASNVSKMLMQIPSHERCEAVLTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQV 111
                  7***********************9989********************************************************************99 PP

       DUF260  98 keel 101
                  k++l
  Araip.I1LYJ 112 KAQL 115
                  9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.59413115IPR004883Lateral organ boundaries, LOB
PfamPF031957.4E-3914112IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MASSTTSSSG SGSPCGACKF LRRKCASDCV FAPYFSSEQG AARFAAIHKV FGASNVSKML  60
MQIPSHERCE AVLTIAYEAQ ARIRDPVYGC VSHIFALQQQ VACLQAQLMQ VKAQLAHQNM  120
QNHHNQWNNN NIGVGQTLLF NNYSNNNQFC PTNNDISYMP SPQSCSLDES IDQSSIISDG  180
IMSMLSTVED FSFQACSKKR SSSYNDSDLG ELQELALRMM RNYN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016185351.11e-168PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB76e-77LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A072U4556e-94A0A072U455_MEDTR; LOB domain protein
STRINGGLYMA03G31830.11e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45093358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.13e-58lateral organ boundaries-domain 16