PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.GK3PH
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 291aa    MW: 31473.7 Da    PI: 7.9196
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.GK3PHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.33.3e-304105197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++dC ++p++     +++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e
  Araip.GK3PH   4 SCNGCRVLRKGCSEDCSIRPCLewiksAESQANATLFLAKFYGRAGLINLINAGPNHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVE 101
                  6*********************9999777889****************************************************************99 PP

       DUF260  94 lall 97 
                  ++l 
  Araip.GK3PH 102 AVLK 105
                  8875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5493109IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-244103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLEWIKS AESQANATLF LAKFYGRAGL INLINAGPNH  60
LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGLPIT PINSELAESG  120
RGPPFKAHDI RHVSKPDNNT VTAASHETKR VKTRSRIKKP KVAEVAKRAS SHESSLSHER  180
VEAVATAAEG ESKEIESDVS VETTTTTVRF HDEPDSDAKG SGGSAEVCGN EVGLELTLGF  240
ETVSREHDVV VPMKKRRIDL KDFCGGVSSD NGSCKMELGL QFQAFNGSVL T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016182188.10.0PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8861e-102LBD41_ARATH; LOB domain-containing protein 41
TrEMBLI1N6Q11e-127I1N6Q1_SOYBN; Uncharacterized protein
STRINGGLYMA19G06280.11e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-103LOB domain-containing protein 41