PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.G88UP
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 330aa    MW: 37328 Da    PI: 8.4649
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.G88UPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.53.3e-33812211128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 
                  lp+G++F+P+d+e++ e+L +kv+++       ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      + +
  Araip.G88UP  81 LPAGVKFDPNDQEIL-EHLDAKVQSDVrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVHtdqegsETR 174
                  799***********9.99******99856643322..22222333336**********.566677888******************744445555778 PP

          NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  W++tgk++++ +  g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Araip.G88UP 175 WHKTGKTRPISV-AGSVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 221
                  ***********9.9999**********6658***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-3676240IPR003441NAC domain
PROSITE profilePS5100532.81281240IPR003441NAC domain
PfamPF023656.0E-1582221IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTWCNRSSVV EGGIEIINHP NLNIIAIPRN SNDNNNSVIS VNHANTPPKP TEIRAVTCPS  60
CGHHIQIQQD QGGGIQDLPG LPAGVKFDPN DQEILEHLDA KVQSDVRKLH PLIDEFIPTL  120
EGENGICYTH PEKLPGVSKD GQVRHFFHRP SKAYTTGTRK RRKVHTDQEG SETRWHKTGK  180
TRPISVAGSV KGFKKILVLY TNYGRQKKPE KTNWVMHQYH LGSNEEEKDG ELVVSKVFYQ  240
TQPRQCANKD PYDERLLMTS QINSVNDISI HALPKNNNNN NAGFVDYYNP GFMNMNYEQM  300
NETTSPQLIP NMVVQGDSSS FIRLPRLDRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.G88UP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193588.10.0NAC domain-containing protein 10-like
RefseqXP_025638321.10.0NAC domain-containing protein 10
SwissprotF4HY611e-117NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A444ZWJ10.0A0A444ZWJ1_ARAHY; Uncharacterized protein
STRINGGLYMA13G24320.11e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-105NAC domain containing protein 10