PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.G72RX
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 208aa    MW: 23167.1 Da    PI: 6.6048
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.G72RXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.51e-3891091100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp  +r +a+ ++ +eA+ar++dP+yG+v++i++lqqq+++l+a+la+l
  Araip.G72RX   9 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVADRCEAAVTISFEAQARLQDPIYGCVAHIFALQQQVMNLQAQLAYL 106
                  7*************************89*********************************************************************9 PP

       DUF260  98 kee 100
                  +e+
  Araip.G72RX 107 REQ 109
                  987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.8098110IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-379107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MKMTGSGTPC GACKFLRRKC VRGCVFAPYF CHEQGATHFA AIHKVFGASN VSKLLAHLPV  60
ADRCEAAVTI SFEAQARLQD PIYGCVAHIF ALQQQVMNLQ AQLAYLREQA AESCNLNPNN  120
TTALYPNHQD LGNSFQMENS TMVPQFLSDS SSNYPSSATQ QYHGNTRSSL IMMESNPIEN  180
YENSSISFDE TCDTVFFDMK RLWPSQLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150412e-83AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204735.11e-158PREDICTED: LOB domain-containing protein 29
SwissprotQ9M2J76e-69LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A0B2NZE23e-91A0A0B2NZE2_GLYSO; LOB domain-containing protein 29
TrEMBLI1N9P63e-91I1N9P6_SOYBN; Uncharacterized protein
STRINGGLYMA19G34600.17e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.14e-70lateral organ boundaries-domain 29