PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.G4JCG
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 303aa    MW: 33155.9 Da    PI: 8.8794
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.G4JCGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015106128123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y C+ C++sF++   L  H  +H
  Araip.G4JCG 106 YDCKTCNRSFPSFQALGGHRASH 128
                  88**********99999998887 PP

2zf-C2H213.30.00025192214123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F++   L  H+r+H
  Araip.G4JCG 192 HECSICGAEFTSGQALGGHMRRH 214
                  78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.31E-8105128No hitNo description
SMARTSM003550.23106128IPR015880Zinc finger, C2H2-like
PfamPF139128.4E-12106130IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.263106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SuperFamilySSF576674.31E-8187214No hitNo description
Gene3DG3DSA:3.30.160.602.7E-4190216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.6E-13191216IPR007087Zinc finger, C2H2
SMARTSM003550.01192214IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.284192219IPR007087Zinc finger, C2H2
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEQQVEEEHV VRSNKNNNND HMQIMMKGKR TKRQRLPSPL RLAMAMPSST SSTSSFGLDT  60
PTTTARTEDE DNNDEDMANC LILLAQGGGG RGTRHNNKKE SIFNLYDCKT CNRSFPSFQA  120
LGGHRASHKK PKILTNSSSV ITTQENYNND PTSTALTLQI SNSSLYCRSI TTTKTTTVME  180
TTAPISKASK VHECSICGAE FTSGQALGGH MRRHRGLLTV SSATAATTTT TTTTTSSSIS  240
GANADHQETK NNNNNVNKNI LKLDLNLPAP EDDHHNRVPK FSFQSKEKVI VFSSAASLVD  300
CHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.G4JCG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207645.10.0zinc finger protein ZAT5-like
RefseqXP_025657648.10.0zinc finger protein ZAT5-like
TrEMBLA0A444YNY10.0A0A444YNY1_ARAHY; Uncharacterized protein
STRINGGLYMA19G37010.21e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-42C2H2 family protein