PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.FY8VC
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 540aa    MW: 58322.5 Da    PI: 6.347
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.FY8VCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP101.18.7e-32166234277
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  Cqv gC++dls +k+yh+rhkvCevhsk+++v+v+g+eqr       fh l efD++krsCr+rLa+hnerrrk+q
  Araip.FY8VC 166 CQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQR-------FHLLAEFDDGKRSCRKRLAGHNERRRKPQ 234
                  **************************************97.......7**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-23160220IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.102163233IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.75E-31164237IPR004333Transcription factor, SBP-box
PfamPF031103.7E-21166232IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MESWSYVSEE KGYVSNDAIS PPNSVGRNSK GSFLGWELKT PGGFSIENQG FEELGFPGMK  60
QLPQDPNPIS SVHSRKIDND PAMATPNAFS SRDDFNSKIS ASLGDSNGGG CDSLIDLKLG  120
RFPDHGDVGV VVPAFSKGAP ILSSSESSTP PKRVRASGIH SQTAYCQVYG CNKDLSGCKD  180
YHKRHKVCEV HSKTSKVIVN GIEQRFHLLA EFDDGKRSCR KRLAGHNERR RKPQVGIHSG  240
KPGRLLQPYG ESRFQGNMLT SASFICQEIL PAGALSSERY GTGDWWRPIK TEDGSGFRHL  300
SSVPISNGHP QSRPLFPSYN EKQFPFLHEN NDATSAGGSI FCENNSSYPP AIGGPNSGSQ  360
SLFQDTSIGG EDFNVFDTES AVQGLSGISD SGCALSLLSS QSQNSSSQSS GIPMARSMVI  420
RSSHSSSHYA MSQVSEKMIG ITSQASSGVS DRFPSELNPA DGSPLSSVLI SDTNDIVNFE  480
MADGIFHGSD FVNVKDRLSC DDVPTIDLLQ LSSQLQRVES ERQSLQVKQE NDSSVSLRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-221662321184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.FY8VC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016180156.10.0squamosa promoter-binding-like protein 13A
RefseqXP_020968459.10.0squamosa promoter-binding-like protein 13A
RefseqXP_025681607.10.0squamosa promoter-binding-like protein 13A
TrEMBLA0A444X7K10.0A0A444X7K1_ARAHY; Uncharacterized protein
STRINGGLYMA04G32002.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18193493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.13e-40SBP family protein