PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.FR0NA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 116aa    MW: 13479.5 Da    PI: 10.8712
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.FR0NAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.81.2e-2026175128
          NAM  75 nratksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  nr+tksgyWkatg+dk+++s+      +++ vg++ktLvfy+g++p+g++t+W+m eyrl
  Araip.FR0NA   2 NRITKSGYWKATGSDKRIISTscnnnnNSNIVGIRKTLVFYHGKSPNGSRTHWIMREYRL 61 
                  89*****************998887777777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.319187IPR003441NAC domain
SuperFamilySSF1019413.14E-25287IPR003441NAC domain
PfamPF023657.7E-10261IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MNRITKSGYW KATGSDKRII STSCNNNNNS NIVGIRKTLV FYHGKSPNGS RTHWIMREYR  60
LVTTPSNSSQ KYVEDLGNWV LCRIFKKKRS IESQHHMVNN KINNVVEILI IFHNVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-2229293173NAC domain-containing protein 19
3swm_B1e-2229293173NAC domain-containing protein 19
3swm_C1e-2229293173NAC domain-containing protein 19
3swm_D1e-2229293173NAC domain-containing protein 19
3swp_A1e-2229293173NAC domain-containing protein 19
3swp_B1e-2229293173NAC domain-containing protein 19
3swp_C1e-2229293173NAC domain-containing protein 19
3swp_D1e-2229293173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.FR0NA
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025672115.13e-73NAC domain-containing protein 83 isoform X1
SwissprotQ9FY934e-24NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A444XWL67e-72A0A444XWL6_ARAHY; Uncharacterized protein
STRINGGLYMA08G01280.19e-35(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-23NAC domain containing protein 32
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]