PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.E56RB
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 159aa    MW: 18167.4 Da    PI: 8.4249
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.E56RBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.22e-15895397
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 kv ++  +l+s++l++p +f++++gg+   s  + l  ++g sW+v l  +k ++++++ +GW eFv+   + +g  + F+++g+s+f   v++f
  Araip.E56RB  8 KVILT-TTLQSKQLRVPDNFLRKYGGE--LSSFVNLSVPDGSSWRVGL--KKVDNKFWFIDGWAEFVQRYSIGVGYLLAFRYEGKSNF--SVHIF 95
                 44444.4456667***********988..6778***************..*********************************99999..88887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-23396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-22396IPR015300DNA-binding pseudobarrel domain
CDDcd100176.10E-17496No hitNo description
PROSITE profilePS5086312.647598IPR003340B3 DNA binding domain
SMARTSM010191.1E-13698IPR003340B3 DNA binding domain
PfamPF023622.9E-131396IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MPRPSFHKVI LTTTLQSKQL RVPDNFLRKY GGELSSFVNL SVPDGSSWRV GLKKVDNKFW  60
FIDGWAEFVQ RYSIGVGYLL AFRYEGKSNF SVHIFNLATA EINYQSPTRS SNEGSYFANC  120
LKIFEEMEDE DFTESKPALQ NLFNGSKLNS VNWGEGRNA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.E56RB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187087.11e-112B3 domain-containing transcription factor VRN1
SwissprotQ8L3W14e-49VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A445A9941e-109A0A445A994_ARAHY; Uncharacterized protein
STRINGGLYMA11G13210.19e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-51B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]