PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DW1WN
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 219aa    MW: 23926 Da    PI: 7.2495
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DW1WNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.61e-38131131100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p+++r da+ +l yeA  r+rdPvyG+v++i++lqqq+ +l+ael ++
  Araip.DW1WN  13 PCGACKFLRRKCVKGCIFAPYFDSDQgTSHFAAVHKVFGASNASKLLMRIPPHKRLDAVLTLSYEALSRVRDPVYGCVAHIFALQQQVVNLQAELTYV 110
                  7***********************9989********************************************************************99 PP

       DUF260  98 kee 100
                  +++
  Araip.DW1WN 111 QAR 113
                  876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.38612114IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-3713111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDCDENNQQR GGPCGACKFL RRKCVKGCIF APYFDSDQGT SHFAAVHKVF GASNASKLLM  60
RIPPHKRLDA VLTLSYEALS RVRDPVYGCV AHIFALQQQV VNLQAELTYV QARLATMHRI  120
PIAAAAASPP TLHSSSSLDH LASSNADLQN ASNNMSMNFD PPPQPPPHST TLESSSFINS  180
SDEPPPPLLL EDGDLQTLAR EFVSRYLPGV RFQPSNNSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016186139.11e-162PREDICTED: LOB domain-containing protein 19-like
SwissprotO813222e-70LBD31_ARATH; LOB domain-containing protein 31
TrEMBLB7FKD75e-96B7FKD7_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGGLYMA03G02631.11e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.14e-63LOB domain-containing protein 31