PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DEH65
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 343aa    MW: 39755.5 Da    PI: 6.6997
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DEH65genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.61.7e-55301601128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeelv++yL+kk+++k+++l +vik+vd+yk+ePwdL++  k+ + +e+ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++s+
  Araip.DEH65  30 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKDVDLYKIEPWDLQEicKIGSeDENEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSS 126
                  69****************************.9***************954555552556**************************************8 PP

          NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++ lvg++ktLvfykgrap+g k++W+mheyrl
  Araip.DEH65 127 sSHCLVGMRKTLVFYKGRAPNGLKSNWIMHEYRL 160
                  55567***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-6225176IPR003441NAC domain
PROSITE profilePS5100560.75530176IPR003441NAC domain
PfamPF023651.4E-2831160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
QIYVQGFYLE FLGAGYIKLR RFEMNAFSHV PPGFRFHPTD EELVDYYLRK KIASKRIDLD  60
VIKDVDLYKI EPWDLQEICK IGSEDENEWY FFSHKDKKYP TGTRTNRATK AGFWKATGRD  120
KAIYSSSSHC LVGMRKTLVF YKGRAPNGLK SNWIMHEYRL DSNQEDGWVV CRVFKKRMPT  180
LRNVVDYDDQ LPFMQGSPST HYPCKHDLHQ FQYNTHDAFL QLPHLESPNQ VLSSPYAYAE  240
NNNNNNGTLQ SYSSERIQQQ LHLLYGSNIE QAVVVDQVTD WRVLDKFVAS QLMSQDQDQA  300
SKETCSVADE QHVATTVLPN GSTKQDDYVS TSASSNCDIH LWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-49201775169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DEH65
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020978772.10.0NAC domain-containing protein 7
RefseqXP_025653690.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-116NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A444Z8T50.0A0A444Z8T5_ARAHY; Uncharacterized protein
STRINGGLYMA05G04250.31e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-115NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]