PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.CF4LQ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 220aa    MW: 25048.2 Da    PI: 5.8132
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.CF4LQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.61.3e-357102195
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                  +C aCk+lrr+C++dCv++pyf  ++ + +fa+vhk+FGasnv++ll +lp ++r+da+ +++y+A ar++dP+yG+v+ i  lqqq+++l+ e++
  Araip.CF4LQ   7 SCGACKYLRRRCTRDCVFSPYFSYDEaSTHFAAVHKVFGASNVSRLLLHLPLHNRSDAAITITYQALARMHDPIYGCVAYIYLLQQQVASLQREID 102
                  6**********************988689***************************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.3556108IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-347102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKGFGSSCGA CKYLRRRCTR DCVFSPYFSY DEASTHFAAV HKVFGASNVS RLLLHLPLHN  60
RSDAAITITY QALARMHDPI YGCVAYIYLL QQQVASLQRE IDDILGNNFM MKNSSCLGVE  120
NYCGNVHQSP MMNINNGIEY TVQEGTRSQC YKSQLANQFS SDEEIDREYE RLLLMDTDNL  180
LYGETDPISL EKFLSGIDQD VFLNHPWFKH NNNNADIIGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016192855.11e-167PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS83e-54LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A0L9UW622e-80A0A0L9UW62_PHAAN; Uncharacterized protein
STRINGGLYMA14G07260.24e-79(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-55LOB domain-containing protein 33