PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.BYF4T
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 360aa    MW: 40054.4 Da    PI: 9.7617
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.BYF4TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016225246223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C++Cgk+F+++  L +H + +
  Araip.BYF4T 225 QCENCGKTFRSSRALGSHRSIC 246
                  7*****************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.5527IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307532IPR007087Zinc finger, C2H2
PfamPF139124.3E-7628IPR007087Zinc finger, C2H2
PROSITE patternPS000280627IPR007087Zinc finger, C2H2
SMARTSM0035579224244IPR015880Zinc finger, C2H2-like
PfamPF139120.01224243IPR007087Zinc finger, C2H2
PROSITE profilePS501578.683224252IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-5225281No hitNo description
SMARTSM003550.2259281IPR015880Zinc finger, C2H2-like
PfamPF139127.4E-8259282IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245259281IPR007087Zinc finger, C2H2
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MERQKCCKLC SRTFPNGRAL GGHMKAHLAT FPLPPKPPQP PAPPLPSSES SSSFSSFSES  60
EPEDKAALVY GLRENPKKSF RVADPEFSPL AAPLLPPPDS VAVQDRESET ESSKKPTRQR  120
SKRTWRARSI LHNHEDDKEQ LKKKQPKLGF MEHEHEYEAE PVSSVSETSV VEDVAMFLVM  180
LSRDTWSNKD AILVKQEGEV ERSKAGSGNG IKMKKVRVRG KHSRQCENCG KTFRSSRALG  240
SHRSICCDGG RSGASDRIFQ CPFCFKIFGS GQALGGHKRS HLIAMAAPSS SSSTAKNFID  300
LNLPAPLEEQ HEDDLGVVSD TLSSALKRTK YPGKRREVPY NSYRRISQVY DNKVQDMLIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122RQRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.BYF4T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020976553.10.0zinc finger protein ZAT1-like
RefseqXP_025627683.10.0zinc finger protein ZAT1
TrEMBLA0A445ES070.0A0A445ES07_ARAHY; Uncharacterized protein
STRINGAES909015e-91(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.13e-30C2H2-like zinc finger protein