PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.BUP6F
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 125aa    MW: 14462.9 Da    PI: 8.9154
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.BUP6FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.4e-20657256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+G+r+++ +g+++AeIrdp+     +r++lg+f+tae+Aa+a++aa+  ++g+
  Araip.BUP6F  6 HYRGIRRRP-WGKFAAEIRDPTRK--GTRIWLGTFDTAEQAARAYDAAAFHFRGH 57
                 7********.**********8542..4***********************99996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-33565IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-24665IPR016177DNA-binding domain
PROSITE profilePS5103225.291664IPR001471AP2/ERF domain
CDDcd000185.93E-20666No hitNo description
SMARTSM003802.1E-36670IPR001471AP2/ERF domain
PfamPF008477.4E-14657IPR001471AP2/ERF domain
PRINTSPR003676.8E-12718IPR001471AP2/ERF domain
PRINTSPR003676.8E-123046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MEGERHYRGI RRRPWGKFAA EIRDPTRKGT RIWLGTFDTA EQAARAYDAA AFHFRGHRAI  60
LNFPNDYVAA SSSGSSRRSQ QQQEHMHQLD HYTTTTSFEL EYFDNKLLEE LLQGQDATTR  120
TSLPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-28564463ATERF1
3gcc_A2e-28564463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.BUP6F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207414.12e-89ethylene-responsive transcription factor ERF098
RefseqXP_025663469.12e-89ethylene-responsive transcription factor ERF098
SwissprotQ9LTC51e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A444YGI25e-88A0A444YGI2_ARAHY; Uncharacterized protein
STRINGXP_004495105.11e-43(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-28ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]