PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.AF2L5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 238aa    MW: 25988 Da    PI: 9.5556
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.AF2L5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260896.2e-2857155194
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++ C+l+ ++     p++q++++ +++k+FG+s + ++++++p+++r+++++sl+yeA+ r+ +Pv+Gavg++++++++l++++  
  Araip.AF2L5  57 SCNGCRVLRKGCSDMCPLRTCLhwipsPQAQAHATLFLAKFFGRSDLFSFISSVPHNNRPELFQSLLYEACGRTINPVNGAVGLLSTGNWHLCEAALR 154
                  6************************999999**************************************************************98765 PP

       DUF260  94 l 94 
                  +
  Araip.AF2L5 155 T 155
                  5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.90856162IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-2457153IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVLKKEVRRI SGGKSEKRWK GRGKTEAVLG RLWKILFVCV NINRGSLTRV GPHSEMSCNG  60
CRVLRKGCSD MCPLRTCLHW IPSPQAQAHA TLFLAKFFGR SDLFSFISSV PHNNRPELFQ  120
SLLYEACGRT INPVNGAVGL LSTGNWHLCE AALRTVLTGG VLTALPEEVI MPVLDDSSAS  180
HAALHFNNTS LSEASKRRSV SGVSTPPAVS VVSGEPSEMS FDDGICSHNQ RKLLNLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935210.11e-137PREDICTED: LOB domain-containing protein 38-like isoform X1
TrEMBLA0A151TTN23e-64A0A151TTN2_CAJCA; LOB domain-containing protein 38
TrEMBLA0A0R0K3S65e-64A0A0R0K3S6_SOYBN; Uncharacterized protein
TrEMBLW9SE377e-64W9SE37_9R
STRINGVIT_18s0001g09250.t016e-59(Vitis vinifera)
STRINGGLYMA14G09750.22e-59(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.19e-56LOB domain-containing protein 38