PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.A5C77
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 282aa    MW: 32377.1 Da    PI: 9.933
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.A5C77genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.31.2e-33191102102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++ ++d+++++++sws++g sfvv+d++ f++ +Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll++i+
   Araip.A5C77  19 FLTKTFDAVDDPATDHVVSWSRSGASFVVWDPHAFSRGLLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEGFVRGHRHLLTSIR 106
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Araip.A5C77 107 RRKA 110
                   *985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3712102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-5915108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3415108IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-201942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.8E-3119108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-205769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-207082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVPPPQPMEG LHEAGPPPFL TKTFDAVDDP ATDHVVSWSR SGASFVVWDP HAFSRGLLPR  60
YFKHNNFSSF VRQLNTYGFR KIDPDKWEFA NEGFVRGHRH LLTSIRRRKA PPPPIQTQTS  120
QSQQGHCLEV GRFGLDEEID RLRRDKQVLM LELVRLRQQQ QTTRSYLQAM EQRLQGTEIK  180
QQQMMAFLAK AMKNPVFIQQ LIQHKEKRKE LEDAMTKKRR RPIEQGPSCS ATTVKVENPP  240
EFAGYAGGFG ASELQILAME MQGYGVDWNK DSVVVIAMIE KM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-251410812120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206220KRKELEDAMTKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204670.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ6VBB21e-114HFA2B_ORYSJ; Heat stress transcription factor A-2b
SwissprotQ9LUH81e-114HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLI1N9K51e-148I1N9K5_SOYBN; Uncharacterized protein
STRINGGLYMA19G34210.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.16e-99heat shock transcription factor A6B