PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.9MG9F
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 321aa    MW: 36644.9 Da    PI: 7.6919
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.9MG9FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.8e-33852261128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk 84 
                  lp+G++F+Ptd+e++ e+L++kv+++ ++l+        +++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++      + +W+
  Araip.9MG9F  85 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICYTHPENLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVNsdeegnETRWH 180
                  799***********9.99*****99984443333333222333336**********.555555677******************844455444788** PP

          NAM  85 atgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                  +tgk+++v+  +g+l+g kk+Lv+y    g+++k+ekt+Wvmh+y+l
  Araip.9MG9F 181 KTGKTRPVYI-RGKLKGYKKILVLYtnyGGKQRKPEKTNWVMHQYHL 226
                  **********.999***********66658999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-3781245IPR003441NAC domain
PROSITE profilePS5100532.6585245IPR003441NAC domain
PfamPF023652.3E-1586226IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MTECNEHENN HGNIIVEGRK DSLIRTCPTC GHHIKCQDQC NEHENNHGNI IVEGRKDSLI  60
RTCPTCGHHI KCQDQGGGLH DLPGLPAGVK FDPTDQEILE HLEAKVRSDI HKLHPLIDEF  120
IPTLEGENGI CYTHPENLPG VSKDGLIRHF FHRPSKAYTT GTRKRRKVNS DEEGNETRWH  180
KTGKTRPVYI RGKLKGYKKI LVLYTNYGGK QRKPEKTNWV MHQYHLGNDE EEKEGELVVS  240
KVFYQTHPRQ CSSLLVNNNK DSSTTLVKGN NNNGFVEYYH SNFISFDQGE HQHRSSGAQV  300
VISHFPLHEA APNYHSLNQK E
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.9MG9F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193277.10.0NAC domain-containing protein 73 isoform X1
RefseqXP_020974107.10.0NAC domain-containing protein 73 isoform X2
RefseqXP_025643557.10.0NAC domain-containing protein 73
SwissprotO494591e-108NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A445A4S80.0A0A445A4S8_ARAHY; Uncharacterized protein
STRINGXP_007132767.11e-167(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-111NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]