PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.82RL7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 331aa    MW: 37815 Da    PI: 8.1261
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.82RL7genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.12e-1767161275
     trihelix   2 WtkqevlaLiearr.emeerlrrgk....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                  Wt qe+l Li+a++ ++e+rl++++                    + + +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e+k +s++
  Araip.82RL7  67 WTIQETLILITAKKlDDERRLKTASsssssssaspacsttptsrsSGELRWKWVENYCWSHGCLRSQNQCNDKWDNLLRDYKKVRDYESKSQSQQ 161
                  *************9544444554435566777888888888888899******************************************965443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-558146IPR009057Homeodomain-like
PROSITE profilePS500906.44659144IPR017877Myb-like domain
PfamPF138375.3E-1266166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSDPPTTPLA PPPIIPSQPH HPHHHHHHHH PPPHLPLIHH STATPPPPSP SPSSSTSLAR  60
EYRKGNWTIQ ETLILITAKK LDDERRLKTA SSSSSSSSAS PACSTTPTSR SSGELRWKWV  120
ENYCWSHGCL RSQNQCNDKW DNLLRDYKKV RDYESKSQSQ QPNYDDNKDL LPSYWTLNKQ  180
QRKEHNLPSN MVFEVYQAIC EYNHADQCVR GYHLMIVMDF VGWRSESSSG TEEDSDNDDD  240
GSESKRRKVK NLGSSIMHSA SVLARALRSC EEKKEKRHRE MMELEQRRIQ MEEARNEVQR  300
QGIATIVAAV TNLSGAIQSL INNNPERHGQ R
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.82RL7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064234e-33AP006423.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT23C14, TM0311, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229739.11e-128trihelix transcription factor GTL1
TrEMBLA0A151SE871e-126A0A151SE87_CAJCA; Uncharacterized protein
STRINGXP_007143775.11e-121(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-40Trihelix family protein