PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.6CI1F
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 391aa    MW: 45457.9 Da    PI: 4.8395
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.6CI1FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1631.1e-50482121129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..................................kvkaeekewyfFsk 63 
                  lppGfrFhPtdeel+++yL +kv g+ + ++ +i e+d +k+ePwdLp +                                  + k +eke+yfF+ 
  Araip.6CI1F  48 LPPGFRFHPTDEELITHYLSQKVVGSCFYATAIIGEADFNKCEPWDLPcQylnffndiifylasfdlflqnlflfiiliffnegRGKMGEKELYFFCL 145
                  79*************************999899***************6589**************************9999886666899******* PP

          NAM  64 rdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  +dkky+tg+r+nrat +gyWkatgkd+e++++  ++l+g+kktLvfykgrap+gekt+Wvmheyrle
  Araip.6CI1F 146 KDKKYPTGERTNRATGAGYWKATGKDREIYNAkAKALIGMKKTLVFYKGRAPNGEKTNWVMHEYRLE 212
                  ******************************9856677****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-1742110IPR003441NAC domain
PROSITE profilePS5100553.10348238IPR003441NAC domain
PfamPF023652.4E-2749211IPR003441NAC domain
SuperFamilySSF1019413.66E-36134238IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MHKNTRDVNS YVKGYLINWV KCSCYITIYI KTNNNRNNNI EMNTKIELPP GFRFHPTDEE  60
LITHYLSQKV VGSCFYATAI IGEADFNKCE PWDLPCQYLN FFNDIIFYLA SFDLFLQNLF  120
LFIILIFFNE GRGKMGEKEL YFFCLKDKKY PTGERTNRAT GAGYWKATGK DREIYNAKAK  180
ALIGMKKTLV FYKGRAPNGE KTNWVMHEYR LEGDNKPSIY NLPKETKKEW ALCRVLHKSE  240
KKVMHVPQPQ GLVEFSSYEN KELPQLMDSS QVTFFSSDPN NQSEDPNPIT RDDDNNNDDI  300
IFDSIETPFL EQQPPYSSSY DSSDLDTLNP ATWDISENAP TSNASKETDF DADMFSLMYN  360
NREVFQTSFE NQEYYAYDSV GHVDNGSLWN F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-404423813165NO APICAL MERISTEM PROTEIN
1ut4_B2e-404423813165NO APICAL MERISTEM PROTEIN
1ut7_A2e-404423813165NO APICAL MERISTEM PROTEIN
1ut7_B2e-404423813165NO APICAL MERISTEM PROTEIN
3swm_A2e-404423816168NAC domain-containing protein 19
3swm_B2e-404423816168NAC domain-containing protein 19
3swm_C2e-404423816168NAC domain-containing protein 19
3swm_D2e-404423816168NAC domain-containing protein 19
3swp_A2e-404423816168NAC domain-containing protein 19
3swp_B2e-404423816168NAC domain-containing protein 19
3swp_C2e-404423816168NAC domain-containing protein 19
3swp_D2e-404423816168NAC domain-containing protein 19
4dul_A2e-404423813165NAC domain-containing protein 19
4dul_B2e-404423813165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.6CI1F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179483.10.0NAC domain-containing protein 92-like isoform X1
TrEMBLA0A444X8810.0A0A444X881_ARAHY; Uncharacterized protein
STRINGGLYMA13G05540.12e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2955722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.14e-73Arabidopsis NAC domain containing protein 87