PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.64GCN
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 308aa    MW: 35406.9 Da    PI: 7.9932
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.64GCNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1775e-55121371128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhPtdeel+v+yL++++++k++++ +vi+evdiyk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nrat sgyWkatg+dk+++s +++
  Araip.64GCN  12 LPPGFRFHPTDEELIVHYLCNQATSKPCPA-SVIPEVDIYKFDPWELPDKTSFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYS-GSK 107
                  79****************************.99***************888899****************************************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +vg+kk Lvfykgr pkg ktdW+mheyrl
  Araip.64GCN 108 HVGVKKALVFYKGRPPKGIKTDWIMHEYRL 137
                  ****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6610164IPR003441NAC domain
PROSITE profilePS5100561.09712164IPR003441NAC domain
PfamPF023651.2E-2613137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEGSRRSSNS ELPPGFRFHP TDEELIVHYL CNQATSKPCP ASVIPEVDIY KFDPWELPDK  60
TSFGENEWYF FSPRDRKYPN GVRPNRATVS GYWKATGTDK AIYSGSKHVG VKKALVFYKG  120
RPPKGIKTDW IMHEYRLVGS RRQPTKQIGS MRLDDWVLCR IYKKRSIAKS MLEPKEEFPT  180
MPQINHHLTS SSNDGNDNND DEQEMMMKFP RTCSLTHLLE MDYLGPISQI LSDGSYNSTF  240
DFQLNSANVG NMIMDPFMKQ PQILEIPNKN NHNNPYYDVD SGKNNLVKQN STINPTIFVN  300
QFFDHSGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-741216917170NO APICAL MERISTEM PROTEIN
1ut4_B2e-741216917170NO APICAL MERISTEM PROTEIN
1ut7_A2e-741216917170NO APICAL MERISTEM PROTEIN
1ut7_B2e-741216917170NO APICAL MERISTEM PROTEIN
3swm_A2e-741216920173NAC domain-containing protein 19
3swm_B2e-741216920173NAC domain-containing protein 19
3swm_C2e-741216920173NAC domain-containing protein 19
3swm_D2e-741216920173NAC domain-containing protein 19
3swp_A2e-741216920173NAC domain-containing protein 19
3swp_B2e-741216920173NAC domain-containing protein 19
3swp_C2e-741216920173NAC domain-containing protein 19
3swp_D2e-741216920173NAC domain-containing protein 19
4dul_A2e-741216917170NAC domain-containing protein 19
4dul_B2e-741216917170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.64GCN
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016202769.10.0NAC transcription factor 29 isoform X1
RefseqXP_025654738.10.0NAC transcription factor 29 isoform X1
SwissprotK4BNG71e-116NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A444Z5020.0A0A444Z502_ARAHY; Uncharacterized protein
STRINGGLYMA02G12220.11e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-116NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]