PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.5R38D
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 155aa    MW: 18157.6 Da    PI: 8.6501
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.5R38DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.31.8e-3611106195
       DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                  aCaaCk++r+kC+++ C+lapyfpa+++++f +vhk+FG+sn++kl+k+++ee+r+++++sl++eA++r+rdP++G +g ++k+ +++++ k+e+ 
  Araip.5R38D  11 ACAACKHQRKKCSENnCILAPYFPANRSREFHAVHKVFGVSNITKLVKSAKEEDRRRVVDSLIWEACCRQRDPIHGPYGEYTKVYNEYKKNKNEIM 106
                  7***********9877***************************************************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.7810112IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-3411106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MQRNNNGMHP ACAACKHQRK KCSENNCILA PYFPANRSRE FHAVHKVFGV SNITKLVKSA  60
KEEDRRRVVD SLIWEACCRQ RDPIHGPYGE YTKVYNEYKK NKNEIMDSST TIYNAYCSNY  120
LHDLDNMMRQ EVVIPFQQHS QTYYITGFLV QTNEP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132691.19e-79hypothetical protein PHAVU_011G116500g
SwissprotQ9LNB92e-38LBD2_ARATH; LOB domain-containing protein 2
TrEMBLV7AHH71e-78V7AHH7_PHAVU; Uncharacterized protein
STRINGGLYMA12G14101.17e-76(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-36LOB domain-containing protein 2