PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.5HP4H
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 218aa    MW: 24210.2 Da    PI: 10.9157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.5HP4HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.35e-124789754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+++L
  Araip.5HP4H 47 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLREL 89
                 79*********************66......***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7774089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1743109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-144695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-94689IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1647102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-114793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MLRVVAVVVE ESGNHSGGGN GNLSLSGGVN GGDQKGKKKG MPAKNLMAER RRRKKLNDRL  60
YMLRSVVPKI SKMDRASILG DAIDYLRELL QRINDLHNEL ESTPPGSSLQ SSTTSLQPLT  120
PTPQTLPCRV KEELYPGVLP SPKNQPAKVE VRVREGRAVN IHMFCTRRPG LLLSTMRALD  180
SFMILSPNFV WAFQMLIESE WAGMKLKRNG LVVATLRH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13654KKKGMPAKNLMAERRRRKK
24855ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016206873.11e-135PREDICTED: transcription factor ICE1
SwissprotQ9LSE23e-79ICE1_ARATH; Transcription factor ICE1
TrEMBLI7EMG72e-85I7EMG7_CAMSI; ICE1
STRINGPOPTR_0012s10780.16e-84(Populus trichocarpa)
STRINGGLYMA16G05390.11e-84(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.45e-63bHLH family protein