PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.47948
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 307aa    MW: 33797.8 Da    PI: 7.3199
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.47948genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.48.7e-121982272756
                  HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  27 aeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++++ LA++l+L  rqV vWFqNrRa+ k
  Araip.47948 198 QKQKQALARQLNLRPRQVEVWFQNRRARTK 227
                  5799************************98 PP

2HD-ZIP_I/II92.74.2e-301972622591
  HD-ZIP_I/II  25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  e+++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  Araip.47948 197 EQKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELK-AL 262
                  789************************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.345144229IPR001356Homeobox domain
SMARTSM003897.5E-8146233IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-15148232IPR009057Homeodomain-like
CDDcd000864.85E-12148230No hitNo description
PfamPF000461.4E-9198227IPR001356Homeobox domain
SuperFamilySSF466891.67E-10198237IPR009057Homeodomain-like
PROSITE patternPS000270204227IPR017970Homeobox, conserved site
SMARTSM003401.1E-24229272IPR003106Leucine zipper, homeobox-associated
PfamPF021831.0E-9229263IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGLDQDANNN NNNKSSSSGL ELVLGLSLTT TTATPPPPSS KPKPYSCHHE APEPSLTLGL  60
SGESFQQVLK SNNNKGAEEP TSGEMCRQAS SPHSSAVSSF SSGGCRVVGA CVKRERDLSS  120
CEEADGDGDG ERVSSRVSDE DEDGSNARKK LRLTKEQSAL LEDSFKQHST LNPVCNHNQS  180
TSLLIVNLID YYNVGNEQKQ KQALARQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK  240
CCETLTDENR RLKKELQELK ALKLAQPLYM PMPAATLTIC PSCERLSNDP PAKPHFYNPF  300
TNPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221229RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.47948
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201581.11e-169homeobox-leucine zipper protein HAT22
SwissprotP466043e-84HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A444ZAT71e-159A0A444ZAT7_ARAHY; Uncharacterized protein
STRINGGLYMA01G40450.11e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-73HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]