PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.435DT
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 234aa    MW: 25192.6 Da    PI: 6.999
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.435DTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.44.1e-321831091
       DUF260 10 rkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
                 rkC+++C++apyf +eq + +fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+
  Araip.435DT  1 RKCVPGCIFAPYFDSEQgATHFAAVHKVFGASNVSKLLMNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQINELN 83
                 79*************9989************************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.4E-31183IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089118.456193IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
RKCVPGCIFA PYFDSEQGAT HFAAVHKVFG ASNVSKLLMN IPVHKRLDAV VTICYEAQAR  60
LRDPVYGCVA HIFALQQQIN ELNWILANRV ADIVNLQAEL SYLQGYLATL ELPHPPQPPP  120
TPPQPTLAPP TLSITDLPPP PPTPASTATV PATYDLSSLF EPMAQTSWAM HNRPIDAPRQ  180
FFSSGTSSLQ SSGGGRDGGD LQTLAHELLR RHGVDPTTPV ACSSAPSSSQ SHSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015950854.11e-107PREDICTED: LOB domain-containing protein 18
SwissprotO221317e-70LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0B0NJT77e-87A0A0B0NJT7_G
STRINGGLYMA03G02620.11e-85(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-56LOB domain-containing protein 18