PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.3S7QC
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 171aa    MW: 19096.8 Da    PI: 6.3811
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.3S7QCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.71.1e-4461051100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +Ca+Ck+lrr+C+kdC++apyfpa++p+kfa+vhk+FGasnv+k+l++lp e+r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+++
  Araip.3S7QC   6 PCASCKLLRRRCTKDCAFAPYFPADEPHKFAIVHKVFGASNVSKMLQELPVEQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQ 103
                  7**********************************************************************************************999 PP

       DUF260  99 ee 100
                  +e
  Araip.3S7QC 104 AE 105
                  87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.7575106IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-446103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGGNSPCASC KLLRRRCTKD CAFAPYFPAD EPHKFAIVHK VFGASNVSKM LQELPVEQRA  60
DAVSSLVYEA NARVRDPVYG CVGAISYLQN QVSELQMQLA VAQAEILCIQ MQQQVEEDPP  120
VMMMMMPPPQ LSNENELSHH HYFTTFGSSS TNNVIHDSFK RQSVFGHDMV S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016165602.11e-127PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW31e-71LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A067FN822e-88A0A067FN82_CITSI; Uncharacterized protein
TrEMBLV4TH272e-88V4TH27_9R
STRINGVIT_13s0067g01880.t016e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-73LBD family protein