PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.24AK5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 302aa    MW: 34734.4 Da    PI: 7.8085
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.24AK5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.34e-36581502103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+i+ed+++++++sws+ +nsfvv+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +g++ ll++ik
   Araip.24AK5  58 FLTKTYDIVEDPSTNHIVSWSKGNNSFVVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANEMFLRGQRVLLKNIK 145
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Araip.24AK5 146 RRKTN 150
                   **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.67E-3653147IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-6054147IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-3954147IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.4E-195881IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3158147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434097121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-19109121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNNPDDHGVG RVMKEEYLGE GSCSFSYPMV VDVPPPPPPP PPPPHPMEGL NESGPPPFLT  60
KTYDIVEDPS TNHIVSWSKG NNSFVVWDPQ AFSITLLPRF FKHNNFSSFV RQLNTYGFKK  120
VDPDRWEFAN EMFLRGQRVL LKNIKRRKTN QTHHHHQQGL DPCVEVGRFG GLDGELNRLR  180
RDRQVLMAEL VKLRQQQQAT KSQIQAMEVK LRKTEQKQQQ MMTFMARAMQ NPNFVQQLVQ  240
QKDWRKELEE AFSNKRMRPI HQGPSNNHDG LLGFEDEDVL AAAEDVDVLA EQLGYLASSP  300
HK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-255315015123Heat shock factor protein 1
5d5v_D2e-254914917131Heat shock factor protein 1
5d5v_B2e-254914917131Heat shock factor protein 1
5d5u_B2e-254914917131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146LKNIKRR
2177182RLRRDR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016173591.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-115HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A151U6N71e-136A0A151U6N7_CAJCA; Heat stress transcription factor A-6b
STRINGGLYMA20G28870.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-108heat shock transcription factor A6B