PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2404G
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 360aa    MW: 40369.9 Da    PI: 4.9299
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2404GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.18.9e-36461372102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e++ed+++++++sws+  nsfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++ik
   Araip.2404G  46 FLTKTFEVVEDPSTDSIVSWSRARNSFVVWDSHRFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLAGQKHLLRTIK 133
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
   Araip.2404G 134 RRRN 137
                   *987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.7E-6142135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.5E-3842135IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.03E-3442135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-3146135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-194669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAGRMRVKEE EETVVLCGSG PGGSSSSSSV SPQPMEGLHD VGPPPFLTKT FEVVEDPSTD  60
SIVSWSRARN SFVVWDSHRF STTILPRYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG  120
FLAGQKHLLR TIKRRRNVTQ SSTNMIQHGE GGGGGSCVEL GEFGLEGEIE RLRRDRTVLM  180
AEIVKLRQQQ HNSRERICSM ESRLQVTEKK QTQMMTFLAK ALHNQSFIHN LSLQNRELQG  240
FEMSRKRRIT ATASVENLQL DPVAVGEEQE ELETLLSSAC DNESSSEMKE TTTTAAAATS  300
ENIWEDLLSE DLVGGNPEDE VVIGDYPHQN LEDLAATNTG DWSEDLQKLV DHMGFLASNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-264413527129Heat shock factor protein 1
5d5v_B3e-264413527129Heat shock factor protein 1
5d5v_D3e-264413527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2404G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103602e-57AP010360.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjB25H22, BM1932a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016163837.10.0heat stress transcription factor A-2 isoform X1
RefseqXP_025666202.10.0heat stress transcription factor A-2 isoform X1
SwissprotP411521e-120HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A445BU911e-166A0A445BU91_ARAHY; Uncharacterized protein
STRINGGLYMA04G05500.51e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-95heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]