PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1Z0SD
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 381aa    MW: 42672.2 Da    PI: 7.675
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1Z0SDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.17.4e-36471891128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..........tksgy 82 
                  lp+G++F+Ptd+el+ e+L++kve+k+    ++++   i+   +i++++P++Lp  v+ +  + +fF++ +++y+tg+rk+r+            + +
  Araip.1Z0SD  47 LPAGVKFDPTDQELI-EHLEAKVEAKRshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSRAYTTGTRKRRKilqndeaeaeRGETR 142
                  799************.99*******9986654443334666646**********.555666799******************8799999886544778 PP

          NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  W++tgk+++v+  kg+++g+kk+Lv+y   g+++k++kt+Wvmh+y+l
  Araip.1Z0SD 143 WHKTGKTRAVML-KGKQKGCKKILVLYtnFGKNRKPQKTNWVMHQYHL 189
                  ************.9999**********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3842208IPR003441NAC domain
PROSITE profilePS5100532.81247208IPR003441NAC domain
PfamPF023651.3E-1648189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MNKMDLIDAK LQEEHQLCAS SLKQCPACGH KFEGSSGKKA EWEWVGLPAG VKFDPTDQEL  60
IEHLEAKVEA KRSHPLIDEF IPTIEGEDGI CYTHPEKLPG VTRDGLSRHF FHRPSRAYTT  120
GTRKRRKILQ NDEAEAERGE TRWHKTGKTR AVMLKGKQKG CKKILVLYTN FGKNRKPQKT  180
NWVMHQYHLG LHEEEKDGEL VVSKIFYQTQ PRQCSWSSSS SSSSITAVAP PVKTNNDTCP  240
VLGFPPMEHF SSFIPLRKTL HNEEVGIGGE TCTPASHIPS SNPVGVFHHN TSIILDDLIS  300
ARFMTPPPPP QFHQQHDNKV VGGTSASGLE ELIMGCTSTS TTHNITKEAS MSNTNPQEAE  360
WLKYSSYWAD PQPQPQPHLH G
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.1Z0SD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016188764.10.0NAC domain-containing protein 73-like isoform X2
RefseqXP_025644019.10.0NAC domain-containing protein 75 isoform X2
SwissprotQ9M0F81e-122NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A445A3G00.0A0A445A3G0_ARAHY; Uncharacterized protein
STRINGXP_004513071.11e-145(Cicer arietinum)
STRINGGLYMA07G15180.41e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2944922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-119NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]