PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1N7IP
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 324aa    MW: 36857.4 Da    PI: 8.3795
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1N7IPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.37.9e-33541951128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk 84 
                  lp+G++F+P+d e++ e+L++kv ++       ++++  ++++  +i++++P++Lp  vk++ +  +fF++ +k+y+tg+rk+r+++      + +W+
  Araip.1N7IP  54 LPAGVKFDPNDIEIL-EHLEAKVMSHVpnlhplIDEFIpTLQDEnGICYTHPEKLP-GVKKDGQIRHFFHRPSKAYTTGTRKRRKVHtdedgsETRWH 149
                  799***********9.99*****99986665443332233555547**********.667777788******************744446555788** PP

          NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  +tgk+++v++ +g ++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Araip.1N7IP 150 KTGKTRPVVAGGGLVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 195
                  **********99999**********6658***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3649214IPR003441NAC domain
PROSITE profilePS5100532.75854214IPR003441NAC domain
PfamPF023654.0E-1455195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAWCNDTHEK EIIASNNSTI TLRPKSDPNV TCPSCGHNIQ IIQEQGGIHE LPGLPAGVKF  60
DPNDIEILEH LEAKVMSHVP NLHPLIDEFI PTLQDENGIC YTHPEKLPGV KKDGQIRHFF  120
HRPSKAYTTG TRKRRKVHTD EDGSETRWHK TGKTRPVVAG GGLVKGFKKI LVLYTNYGRQ  180
KKPEKTNWVM HQYHLGSNEE ERDGELVVSK VFYQTQPRQC GNSIVIKEDN DDDLPYGKIL  240
MMNNSSKKHK NNNDRNVAAP VVDYYINYDH VDHHNHNHNS QRCSSPTQLI PNLVLQGDSS  300
SLFRFASSSL DGNTNKTRLF ERKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.1N7IP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179280.10.0NAC domain-containing protein 73
RefseqXP_025684402.10.0NAC domain-containing protein 73
SwissprotO494591e-114NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A444WYI70.0A0A444WYI7_ARAHY; Uncharacterized protein
STRINGGLYMA07G32250.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-106NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]