PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.15T8K
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 422aa    MW: 48173.6 Da    PI: 9.1975
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.15T8KgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-15896398
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 k  + +++ +s++l++p +f++++g +   s   t+  ++g  W+v+l  +k ++++++ +GW eFv+   + +g  +vF+++g+s+f   v++f+
  Araip.15T8K  8 KLVL-PSTIQSRQLRIPDTFLNRYGAD--LSSIATFSVPDGSIWRVRL--KKLDNGFWFVDGWAEFVQRYSIGVGYLIVFRYEGKSTF--IVRIFN 96
                 4444.55566667***********977..7779***************..********************************998888..999985 PP

2B355.88.6e-18289379498
                  E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  vl ps+  + ++++lp  fae+h +++  +   ++l+ ++gr+W v++ yr+++    l++GW eF+ +n+L egD++vF+l   +e  l v++fr
  Araip.15T8K 289 VLRPSYLYRGCIMYLPSCFAEKHlNEV--S-GFIKLQLSDGRQWPVRCLYRGGR--AKLSQGWFEFAIENNLGEGDVCVFELLPMKEVILQVTLFR 379
                  78899******************5333..3.369999999********665555..66***********************875566666777666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-21396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-22396IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-16496No hitNo description
PROSITE profilePS5086312.111598IPR003340B3 DNA binding domain
SMARTSM010193.3E-13698IPR003340B3 DNA binding domain
PfamPF023621.9E-13996IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-23278379IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-24280380IPR015300DNA-binding pseudobarrel domain
CDDcd100172.79E-22284379No hitNo description
SMARTSM010196.6E-16286381IPR003340B3 DNA binding domain
PROSITE profilePS5086314.128286381IPR003340B3 DNA binding domain
PfamPF023621.1E-15289379IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MPRPSFHKLV LPSTIQSRQL RIPDTFLNRY GADLSSIATF SVPDGSIWRV RLKKLDNGFW  60
FVDGWAEFVQ RYSIGVGYLI VFRYEGKSTF IVRIFNLATS EISYQSPVRS SNEGAYFANR  120
LKIFEELEDE DSAEYSSPSG LTPGALQNKF TPEKNYTPPP LQNLFNGSKL NSVNWGDSAN  180
TLSSRSANSL DSQLTRDIGV QFNAIEFKRS TDELKLRTSV DEKEKKAPRK KRKSDGQEPS  240
EHQEEEAEMR FRFYESASAR KRTVTAEERE RAVNAAKAFE PLNPFCRVVL RPSYLYRGCI  300
MYLPSCFAEK HLNEVSGFIK LQLSDGRQWP VRCLYRGGRA KLSQGWFEFA IENNLGEGDV  360
CVFELLPMKE VILQVTLFRV TEDDGFFLPP PLPQPSQNLV SQSKMLNAHM HQRLGSGKLI  420
RN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A9e-6925238215144B3 domain-containing transcription factor VRN1
4i1k_B9e-6925238215144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.15T8K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187086.10.0B3 domain-containing transcription factor VRN1
RefseqXP_025642218.10.0B3 domain-containing transcription factor VRN1
SwissprotQ8L3W11e-125VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A445A8W10.0A0A445A8W1_ARAHY; Uncharacterized protein
STRINGXP_007131905.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-70related to vernalization1 1
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]