PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.12NAS
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YC
Protein Properties Length: 301aa    MW: 34276.7 Da    PI: 7.1301
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.12NASgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC164.21.8e-511192202100
        NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                  l++fw +q   ie+a+df+ h+lPlarikki+kade+vkmisaeaP+++skace+fi+elt+r+w++aeenkrrtl+k+diaaavt+td+fdflvd+v
  Araip.12NAS 119 LHNFWDNQyreIEQAADFRIHSLPLARIKKIMKADENVKMISAEAPIIFSKACEMFIMELTMRAWNNAEENKRRTLQKNDIAAAVTKTDVFDFLVDVV 216
                  899****99999************************************************************************************** PP

        NF-YC  97 prde 100
                  prde
  Araip.12NAS 217 PRDE 220
                  **97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.14E-31105212IPR009072Histone-fold
PfamPF008087.6E-21140203IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.3E-37141218IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEIPTQQLTN ATLACFNAYI SSCNKPLKAR ATSSYKNIIM RYKHHSYISS SVFPLSTELK  60
SLIVVESDQS ATRGTSTPSH TKVVAGPSVP SPLLRDHQHS HHYIHYHHLQ QEEEFHQKLH  120
NFWDNQYREI EQAADFRIHS LPLARIKKIM KADENVKMIS AEAPIIFSKA CEMFIMELTM  180
RAWNNAEENK RRTLQKNDIA AAVTKTDVFD FLVDVVPRDE TVDLGLYAGI RRGGANNNIV  240
PCYYYVPPQH VMGPPPYGPP RVPMVGRHVP NQDNIDEQQN SENTTHAMCP KEQNHSSDSD  300
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C2e-4011921819119HapE
4g91_C2e-4011921819119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190196RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016197421.10.0PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ9ZVL35e-57NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLW9QV282e-62W9QV28_9R
STRINGPOPTR_0008s20780.16e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.29e-57nuclear factor Y, subunit C2