PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.0S3JI
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 358aa    MW: 40301.8 Da    PI: 6.8812
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.0S3JIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.62.4e-36501921128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgy 82 
                  lp+G++F+Ptd+el+ e+L++kve+k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          + +
  Araip.0S3JI  50 LPAGVKFDPTDQELI-EHLEAKVESKNMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqnecdlqGGETR 145
                  799************.99*********5553344444434666646**********.555666799******************84555554433778 PP

          NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Araip.0S3JI 146 WHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 192
                  ************.999***********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-3845211IPR003441NAC domain
PROSITE profilePS5100533.0150211IPR003441NAC domain
PfamPF023651.8E-1651192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MNNNKISNLS SVSSSDLIDA KLEEHQWCGG SKQCPGCGHK FESKPDWLGL PAGVKFDPTD  60
QELIEHLEAK VESKNMKSHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG LSKHFFHRPS  120
KAYTTGTRKR RKIQNECDLQ GGETRWHKTG KTRPVMVNGK QKGCKKILVL YTNFGKNRKP  180
EKTNWVMHQY HLGQHEEEKE GELVVSKIFY QTQPRQCNWS SDRSATTTIA TAEGSGEPLQ  240
NSRRDSGSGS CSSKEINIGH RDEMSAVVGV NNTPITSFTH PLDIHHHLKS DHFSFIPFRK  300
NFDEVGIGEA STAREVQASG SCDEVVHEHE SSITNTQEAE WLKYSSYWPD PDNPDHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-134819213140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.0S3JI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025656168.10.0NAC domain-containing protein 75
RefseqXP_025656169.10.0NAC domain-containing protein 75
RefseqXP_025656170.10.0NAC domain-containing protein 75
SwissprotQ9M0F81e-140NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A444YZJ00.0A0A444YZJ0_ARAHY; Uncharacterized protein
STRINGGLYMA08G03590.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-137NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]