PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.0I3UA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 251aa    MW: 28777.5 Da    PI: 9.4113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.0I3UAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376.2e-1210841797
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 ++p +f++++gg+   s  + l  ++g sW v l  +k ++++++ +GW eFv+   + +g  + F+++g+ +f   v++f
  Araip.0I3UA 10 RVPDNFLRKYGGE--LSSFVNLSVPEGSSWHVGL--KKVDNKFWFIDGWAEFVQRYSIGVGYLLAFRYEGKLNF--SVHIF 84
                 68********988..6778***************..*******************************9885555..88877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.702187IPR003340B3 DNA binding domain
SMARTSM010190.0014587IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-18985IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-18985IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-131085No hitNo description
PfamPF023628.0E-101085IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MRNLICELQR VPDNFLRKYG GELSSFVNLS VPEGSSWHVG LKKVDNKFWF IDGWAEFVQR  60
YSIGVGYLLA FRYEGKLNFS VHIFNLATAE INYQSPTRSS NEGSYFANRL KIFEEMEDED  120
FTESKPALQN LFNGSKLNSV NWGEGGNALP AKSARDIGFQ FNAIEFKKST DELKLCASFE  180
EKAKKTARKK RKSKPGSAKG QEASDEQKEE REMRIRLYES ASARKRTVTA EEREKVVNEA  240
KAFEPKFYLM P
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.0I3UA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016178166.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A444X2G91e-180A0A444X2G9_ARAHY; Uncharacterized protein
STRINGGLYMA11G13210.11e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-48B3 family protein