PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9985_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 230aa    MW: 24183.3 Da    PI: 5.1864
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9985_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.87.8e-43661651100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+
  Neem_9985_f_1  66 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAK 161
                    7**********************************************************************************************9 PP

         DUF260  97 lkee 100
                    +++ 
  Neem_9985_f_1 162 AQAD 165
                    9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.22865166IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-4366163IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MENYEVAGAT TATAANSTIT NIAGATTATA ANSTITNSTA GSSSPPPSSS SPNSAPNPPP  60
PVVISPCAAC KILRRRCADK CVLAPYFPPT EPAKFTIAHR VFGASNIIKF LQELPESQRA  120
DAVSSMVYEA SARIRDPVYG CAGAICQLQK QVNELQAQLA KAQADLVNMQ CQQANLAALL  180
CMEMSKSPQP NSPESVDNFI ITSPGSPQQG NPSCFLDDNN LSGPLWPLWT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488170.11e-110PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR09e-74LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK083e-73LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A067G4031e-110A0A067G403_CITSI; Uncharacterized protein
STRINGGLYMA11G15810.14e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-61LOB domain-containing protein 1